When you select (click) the menu item STOREFRONT, it should expose those items that are for the general user community. It should not have the Automated Resource Query, or any of the Prototyping Team components. It SHOULD have URLS to take you to the Research Storefront and the Prototyping Storefront and the Production Storefront. Each of the team storefronts will have their own application exposure with appropriate security as dictated by the team (e.g., prototyping team has customers that need CAC authentication and the Research team can expose their Automated Resource Query to the world, for example).
I will write a separate requirement that specifies the Team Storefront needs.